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  1. cd ; pwd

  2. git clone http://github.com/PapenfussLab/gridss/

  3. cd gridss/

  4. git submodule init

  5. git submodule update

  6. cd src/main/c/gridsstools/htslib/

  7. autoheader

  8. autoconf

  9. ./configure && make

  10. cd ..

  11. autoheader

  12. autoconf

  13. ./configure && make all

  14. cd ; pwd

  15. ls -la $PWD/miniconda3/pkgs/gridss-2.12.2-h270b39a_0/share/gridss-2.12.2-0/

  16. ml purge

  17. ml intel SAMtools/1.10-GCC-8.3.0 HTSlib/1.10.2-GCC-8.3.0 RepeatMasker/4.0.9-p2-gompi-2019b-HMMER BCFtools/1.10.2-GCC-8.3.0 BWA/0.7.17-intel-2019b Java/11.0.2 R-bundle-Bioconductor/3.10-fosscuda-2019b-R-3.6.2

  18. mu

  19. ml Kraken/1.1-foss-2019b-Perl-5.30.0

  20. conda activate base (environtment ที่เรามีอยู่เดิม) หรือ conda activate gridss (environtment ที่เราสร้างใหม่)

  21. gridss --help

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