This article will guide you to run Jupyter Notebook via Miniconda on a LANTA HPC system, which requires ssh tunneling to LANTA HPC.
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Creating an environment to run the Jupyter Notebook
Load Miniconda module
Use the
ml av Minicondacommand to see which version of Miniconda is available on the LANTA HPC system.Use the
ml Miniconda3/xx.xx.xcommand to load the Miniconda version that you want to use. If you don't specify a version, the default version (D) is loaded, which is Miniconda3/22.11.1-1.
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Use the
conda create -n myenv python=3.9commands to create the conda environment with myenv name and a specific version of python.Use the
conda activate myenvto activate the myenv environment.
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username@lanta:~> conda create -n myenv python=3.9 Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan ## environment location: /your directory/envs/myenv added / updated specs: - python=3.9 The following packages will be downloaded: package | build ---------------------------|----------------- ca-certificates-2023.01.10 | h06a4308_0 120 KB certifi-2022.12.7 | py39h06a4308_0 150 KB ------------------------------------------------------------ Total: 270 KB The following NEW packages will be INSTALLED: _libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main _openmp_mutex pkgs/main/linux-64::_openmp_mutex-5.1-1_gnu ca-certificates pkgs/main/linux-64::ca-certificates-2023.01.10-h06a4308_0 certifi pkgs/main/linux-64::certifi-2022.12.7-py39h06a4308_0 ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.38-h1181459_1 libffi pkgs/main/linux-64::libffi-3.4.2-h6a678d5_6 libgcc-ng pkgs/main/linux-64::libgcc-ng-11.2.0-h1234567_1 libgomp pkgs/main/linux-64::libgomp-11.2.0-h1234567_1 libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-11.2.0-h1234567_1 ncurses pkgs/main/linux-64::ncurses-6.4-h6a678d5_0 openssl pkgs/main/linux-64::openssl-1.1.1t-h7f8727e_0 pip pkgs/main/linux-64::pip-22.3.1-py39h06a4308_0 python pkgs/main/linux-64::python-3.9.16-h7a1cb2a_0 readline pkgs/main/linux-64::readline-8.2-h5eee18b_0 setuptools pkgs/main/linux-64::setuptools-65.6.3-py39h06a4308_0 sqlite pkgs/main/linux-64::sqlite-3.40.1-h5082296_0 tk pkgs/main/linux-64::tk-8.6.12-h1ccaba5_0 tzdata pkgs/main/noarch::tzdata-2022g-h04d1e81_0 wheel pkgs/main/linux-64::wheel-0.38.4-py39h06a4308_0 xz pkgs/main/linux-64::xz-5.2.10-h5eee18b_1 zlib pkgs/main/linux-64::zlib-1.2.13-h5eee18b_0 Proceed ([y]/n)? y ... username@lanta:~> conda activate myenv (myenv) username@lanta:~> |
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(myenv) username@lanta:~> conda install jupyter ... (myenv) username@lanta:~> conda install -c anaconda tensorflow-gpu ... |
Running Jupyter Notebook via ssh tunneling
Example script for running Jupyter Notebook
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http://127.0.0.1:8714/?token=2923d6fab4ef109f30e63a77014e632eed3fd2a5fa561929 |
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