This article will guide you to create an environment using Miniconda on a LANTA HPC system.
Using Miniconda via Easybuild
Load Miniconda module
Use the ml av Miniconda command to see which version of Miniconda is available on the LANTA HPC system.
Use the ml Miniconda3/xx.xx.x command to load the Miniconda version that you want to use. If you don't specify a version, the default version (D) is loaded, which is Miniconda3/22.11.1-1.
| Code Block |
|---|
username@lanta:~> ml av Miniconda
---------------------- /lustrefs/disk/modules/easybuild/modules/all -----------------------
Miniconda3/22.11.1-1
Use "module spider" to find all possible modules and extensions.
Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys".
username@lanta:~> ml Miniconda3/22.11.1-1 |
Activate your environment
Use the conda env list command to view a list of your environments.
If you want to activate your environment such as TensorFlow-2.6.0, you can use the conda activate tensorflow-2.6.0 command.
| Code Block |
|---|
username@lanta:~> conda env list
# conda environments:
#
base /lustrefs/disk/modules/easybuild/software/Miniconda3/22.11.1-1
netcdf-py39 /lustrefs/disk/modules/easybuild/software/Miniconda3/22.11.1-1/envs/netcdf-py39
pytorch-1.11.0 /lustrefs/disk/modules/easybuild/software/Miniconda3/22.11.1-1/envs/pytorch-1.11.0
tensorflow-2.6.0 /lustrefs/disk/modules/easybuild/software/Miniconda3/22.11.1-1/envs/tensorflow-2.6.0
username@lanta:~> conda activate tensorflow-2.6.0
(tensorflow-2.6.0) username@lanta:~> |
Creating an environment in the user’s home
Create an environment
Use the conda create -n myenv commands to create the conda environment with myenv name.
| Code Block |
|---|
username@lanta:~> conda create -n myenv
Collecting package metadata (current_repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /your directory/envs/myenv
Proceed ([y]/n)? y
...
username@lanta:~> |
Create an environment with a specific version of the packages
| Code Block |
|---|
username@lanta:~> conda create -n myenv python=3.9
username@lanta:~> conda create -n myenv python=3.9 scipy=0.17.3 |
Creating an environment in the project’s home
Specify a location for an environment
| Code Block |
|---|
username@lanta:~> conda create --prefix /your project directory/envs |
Specify a location for an environment with a specific version of the packages
| Code Block |
|---|
username@lanta:~> conda create --prefix /your project directory/envs python=3.9 |
Activate your environment in the project’s home
| Code Block |
|---|
username@lanta:~> conda activate /your project directory/envs |
Creating an environment from an environment.yml file
A simple environment.yml file
| Code Block |
|---|
name: test
dependencies:
- python=3.9
- numpy=1.23.1
- pandas |
Create the environment from the environment.yml file in the user’s home
| Code Block |
|---|
username@lanta:~> conda env create -f environment.yml |
Create the environment from the environment.yml file in the project’s home
| Code Block |
|---|
username@lanta:~> conda env create -f environment.yml --prefix /your project directory/envs |
...
Related articles
| Filter by label (Content by label) |
|---|
| showLabels | false |
|---|
| max | 5 |
|---|
| spaces | com.atlassian.confluence.content.render.xhtml.model.resource.identifiers.SpaceResourceIdentifier@48ae393 |
|---|
| sort | modified |
|---|
| showSpace | false |
|---|
| reverse | true |
|---|
| type | page |
|---|
| cql | label = "jupyter" and space = currentSpace ( ) |
|---|
| labels | singularity python container |
|---|
|
...