This article will guide you to create the environment using Miniconda on a LANTA HPC system. You can see an An overview of the content from can be found in the table of contents below for the benefit immediate visualization of viewing the interesting parts immediately.
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Using Miniconda on LANTA HPC
Load Miniconda module
Use the
ml av Minicondacommand to see which version of Miniconda is available on the LANTA HPC system.Use the
ml Miniconda3/xx.xx.xcommand to load the Miniconda version that you want to use. If you don't specify a version, the default version (D) is loaded, which is Miniconda3/22.11.1-1.
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(tensorflow-2.6.0) username@lanta:~> conda deactivate username@lanta:~> |
Creating the environment in the user’s home
Create the environment
Use the conda create -n myenv commands to create the environment with myenv name.
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username@lanta:~> conda create -n myenv python=3.9 numpy=1.23.5
Collecting package metadata (current_repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /your directory/envs/myenv
added / updated specs:
- numpy=1.23.5
- python=3.9
The following packages will be downloaded:
package | build
---------------------------|-----------------
blas-1.0 | mkl 6 KB
ca-certificates-2023.01.10 | h06a4308_0 120 KB
certifi-2022.12.7 | py39h06a4308_0 150 KB
intel-openmp-2021.4.0 | h06a4308_3561 4.2 MB
mkl-2021.4.0 | h06a4308_640 142.6 MB
mkl-service-2.4.0 | py39h7f8727e_0 59 KB
mkl_fft-1.3.1 | py39hd3c417c_0 182 KB
mkl_random-1.2.2 | py39h51133e4_0 309 KB
numpy-1.23.5 | py39h14f4228_0 10 KB
numpy-base-1.23.5 | py39h31eccc5_0 6.7 MB
------------------------------------------------------------
Total: 154.3 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main
_openmp_mutex pkgs/main/linux-64::_openmp_mutex-5.1-1_gnu
blas pkgs/main/linux-64::blas-1.0-mkl
ca-certificates pkgs/main/linux-64::ca-certificates-2023.01.10-h06a4308_0
certifi pkgs/main/linux-64::certifi-2022.12.7-py39h06a4308_0
intel-openmp pkgs/main/linux-64::intel-openmp-2021.4.0-h06a4308_3561
ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.38-h1181459_1
libffi pkgs/main/linux-64::libffi-3.4.2-h6a678d5_6
libgcc-ng pkgs/main/linux-64::libgcc-ng-11.2.0-h1234567_1
libgomp pkgs/main/linux-64::libgomp-11.2.0-h1234567_1
libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-11.2.0-h1234567_1
mkl pkgs/main/linux-64::mkl-2021.4.0-h06a4308_640
mkl-service pkgs/main/linux-64::mkl-service-2.4.0-py39h7f8727e_0
mkl_fft pkgs/main/linux-64::mkl_fft-1.3.1-py39hd3c417c_0
mkl_random pkgs/main/linux-64::mkl_random-1.2.2-py39h51133e4_0
ncurses pkgs/main/linux-64::ncurses-6.4-h6a678d5_0
numpy pkgs/main/linux-64::numpy-1.23.5-py39h14f4228_0
numpy-base pkgs/main/linux-64::numpy-base-1.23.5-py39h31eccc5_0
openssl pkgs/main/linux-64::openssl-1.1.1t-h7f8727e_0
pip pkgs/main/linux-64::pip-22.3.1-py39h06a4308_0
python pkgs/main/linux-64::python-3.9.16-h7a1cb2a_0
readline pkgs/main/linux-64::readline-8.2-h5eee18b_0
setuptools pkgs/main/linux-64::setuptools-65.6.3-py39h06a4308_0
six pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_1
sqlite pkgs/main/linux-64::sqlite-3.40.1-h5082296_0
tk pkgs/main/linux-64::tk-8.6.12-h1ccaba5_0
tzdata pkgs/main/noarch::tzdata-2022g-h04d1e81_0
wheel pkgs/main/linux-64::wheel-0.38.4-py39h06a4308_0
xz pkgs/main/linux-64::xz-5.2.10-h5eee18b_1
zlib pkgs/main/linux-64::zlib-1.2.13-h5eee18b_0
Proceed ([y]/n)? y
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Creating the environment in the project’s home
Specify a location for the environment
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username@lanta:~> conda activate /your project directory/envs (/your project directory/envs) username@lanta:~> |
Creating the environment from an requirements.yml file
A simple requirements.yml file
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username@lanta:~> conda env create -f requirements.yml --prefix /your project directory/envs Collecting package metadata (repodata.json): done Solving environment: done Downloading and Extracting Packages Preparing transaction: done Verifying transaction: done Executing transaction: done |
Removing the environment
Remove the environment in the user’s home
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username@lanta:~> rm -rf /your project directory/envs |
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