This article will guide you to run the Jupyter Notebook via Mamba on the LANTA HPC system, which requires ssh tunneling to the LANTA HPC. An overview of the content can be found in the table of contents below for immediate visualization of the interesting parts.

Creating an environment to run the Jupyter Notebook

Load Mamba module

1. Use the ml av Mamba command to see which version of Mamba is available on the LANTA HPC system.

2. Use the ml Mamba/xx.xx.x command to load the Mamba version that you want to use. If you don't specify a version, the default version (D) is loaded, which is Mamba/23.11.0-0.

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(myenv) username@lanta:~> conda install jupyter
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(myenv) username@lanta:~> pip3 install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cu118
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Running Jupyter Notebook via ssh tunneling

Example of Slurm script for running Jupyter Notebook

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2. Copy/Paste the following command into your local terminal for ssh tunneling to the LANTA HPC

ssh -L 871460151:x1000c2s0b0n0x1001c7s7b0n0:871460151 username@lanta.nstda.or.th -i id_rsa

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http://127.0.0.1:871460151/tree?token=2923d6fab4ef109f30e63a77014e632eed3fd2a5fa56192913acf46197090432de43db8f65d8651361ad319861bd04f5

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Shutting down the Jupyter Notebook

When you’re done with the Jupyter Notebook session, you can start the shutdown process by closing the browser and terminal on your local machine. Then, you must cancel your job in the Slurm system of the LANTA HPC with the scancel JOBID command.

username@lanta:~> scancel xxxxx

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