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There are mainly three approaches in preparing an environment on LANTA:

Users should select one over another. They should not be mixed, since library conflicts may occur.

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Expand
title [Feb 2024] Current CPE toolchains

CPE toolchain

Note

cpeGNU/23.03

GCC 11.2.0

cpeCray/23.03

CCE 15.0.1

cpeIntel/23.03

Deprecated and hidden. It will be removed in the future.

cpeIntel/23.09

Intel Compiler 2023.1.0

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Code Block
languagebash
username@lanta-xname:~> module availoverview
--------------------------------- /lustrefs/disk/modules/easybuild/modules/all ---------------------------------
ADIOS2   ADIOS2/2.9.0-cpeCray-23.03     (2)   EasyBuild  (1)   MAFFT            ParallelIO/2.6.2-cpeIntel-23.09(1)   Trimmomatic  ADIOS2/2.9.1-cpeIntel-23.09(1)   libaec        (1)
Amber  (D)       Perl/5.36.0-cpeGNU-23.03(1)   Eigen  Amber/2022-cpeGNU-CUDA-11.7    (1)   METIS           (2)   VASP   PostgreSQL/15.3-cpeIntel-23.09    Apptainer/1.1.6  (3)   libdeflate    (1)
Apptainer     (1)   FDS        (1)   MPC       QuantumESPRESSO/7.2-libxc-6.1.0-cpu  (D)    Armadillo/12.4.0-cpeIntel-23.09(1)   VCFtools     (1)   libgeotiff    (1)
Armadillo    QuantumESPRESSO/7.2-libxc-6.1.0-gpu
   AutoDock-vina/1.2.5 (1)   FastQC     (1)   MPFR            (1)   WPS      RAxML-NG/1.2.0-cpeGNU-23.03    Autoconf/(2.71)   libiconv      (1)
AutoDock-vina (1)   FortranGIS (1)   Mamba           (1)   WRF      SAMtools/1.17-cpeGNU-23.03    Automake/1.16.5(1)   libjpeg-turbo (2)
Autoconf      (1)   FreeXL     (1)   MrBayes         (1)     SCOTCH/7.0.3-cpeCray-23.03WRFchem     Autotools/20220317 (1)   libpciaccess  (1)
Automake      (1)   GATK       (1)   NASM        SPAdes/3.15.4-cpeGNU-23.03    BCFtools/1.17-cpeGNU-23.03(1)   XZ           (3)   libpng        SQLite/3.41.2-cpeIntel-23.09
   BEDTools/2.30.0-cpeGNU-23.03     (3)
Autotools     (1)   GDAL       (1)   Nextflow        SWIG/4.0.2-cpeGNU-23.03(2)    BLAST+/2.14.0-cpeGNU-23.03Xerces-C++   (1)   libreadline   (3)
BCFtools      (1)   GEOS      SWIG/4.1.1-cpeIntel-23.09 (1)   OpenEXR         (D1)    BLASTDB/v5aws-ofi-nccl (1)   libtirpc      (1)
BEDTools      (1)   GMP        (2)   OpenFOAM        (2)   Tcl/8.6.13-cpeIntel-23.09
   BWA/0.7.17-cpeGNU-23.03 beagle-lib   (1)   libtool       (1)
BLAST+        (1)   GROMACS    (2)    Trimmomatic/0.39-Java-17OpenJPEG     BamTools/2.5.2-cpeGNU-23.03   (1)   binutils     (1)   libunwind     (1)
BLASTDB    VASP/6.3.2-GNU-cpu_vtst   (1)   GSL        (D1)    Beast/2.7.5-cpeGNU-23.03OpenSSL         (1)   bzip2        (3)   libxml2       VASP/6.3.2-Intel-cpu_vtst(2)
BWA       Bison/3.8.2    (1)   Gaussian   (1)   PCRE            (1)   cURL         (1)   VASP/6.3.2-NVHPC-gpu_vtstlz4    Boost/1.79.0-cpeGNU-23.03       (3)
BamTools      (1)   Go         VCFtools/0.1.16-cpeGNU-23.03(1)   PCRE2  Boost/1.81.0-cpeGNU-23.03         (1)   canu         (1)   minimap2   WPS/4.4-DM-cpeCray-23.03   (1)
Beast         (D1)    Boost/1.81.0-cpeIntel-23.09HDF-EOS    (1)   PROJ            (1)   cpeCray      (1)    WPS/4.5-DM-cpeIntel-23.09nccl     Boost/1.82.0-cpeCray-23.03     (1)
Bison         (D1)   HDF    WRF/4.4.2-DMSM-cpeCray-23.03    Bowtie/1.3.1-cpeGNU-23.03(1)   ParallelIO      (1)   cpeGNU       (1)   ncurses    WRFchem/4.5.1-DM-cpeIntel-23.09    Bowtie2/2.5.1-cpeGNU-23.03 (1)
Boost         (4)   HTSlib     (1)   Perl     XZ/5.4.3-cpeCray-23.03    C-Blosc2/2.10.5-cpeIntel-23.09   (1)   cpeIntel     (1)   numactl       XZ/5.4.3-cpeGNU-23.03
   CFITSIO/4.2.0-cpeIntel-23.09   (1)
Bowtie        (1)   HYPRE      (1)   PostgreSQL      (1)   ecCodes      (1)   pkgconf       (1)
Bowtie2       (1)   ICU        (3)   QuantumESPRESSO (2)   expat        (2)   tbb           (1)
C-Blosc2      (1)   Imath      (1)   RAxML-NG        (1)   flex         (1)   xorg-macros   (1)
CFITSIO       (1)   JasPer     (2)   SAMtools        (1)   gettext      (1)   zfp           (2)
CGAL          (1)   Java       (2)   SCOTCH          (1)   git-lfs      (1)   zlib          (2)
CMake         (2)   KaHIP      (1)   SPAdes          (1)   gperftools   (1)   zstd          (3)
CrayNVHPC     (1)   LMDB       (1)   SQLite          (1)   groff        (1)
DB            (1)   LibTIFF    (1)   SWIG            (2)   hwloc     XZ/5.4.3-cpeIntel-23.09   (1)
ESMF          (D1)    CGAL/5.5.2-cpeCray-23.03  M4         (1)   Tcl             (1)   jbigkit      Xerces-C++/3.2.4(1)
Expand
titleExample: Boost/1.81.0-cpeGNU-23.03
Code Block
languagebash
module purge
module load Boost/1.81.0-cpeGNU-23.03
echo ${CPATH}
echo ${LIBRARY_PATH}
echo ${LD_LIBRARY_PATH}

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