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There are mainly three approaches in preparing an environment on LANTA:
Module system Manual installation (this guide)
Conda environment (please visit Mamba / Miniconda3)
Container (please visit Container (Apptainer / Singularity))
Users should select one over another. They should not be mixed, since library conflicts may occur.
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Users can readily use ThaiSC modules and CPE toolchains to build their applications. Some popular application software are pre-installed as well, for more information, refer to Applications usage.
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username@lanta-xname:~> module overview ------------------------------------- /lustrefs/disk/modules/easybuild/modules/all -------------------------------------- ADIOS2 (2) FriBidi (2) MrBayes (1) Trimmomatic (1) hwloc (1) ATK (2) GATK (1) NASM (1) UDUNITS2 (1) intltool (1) Amber (1) GDAL (2) NLopt (2) VASP (3) jbigkit (2) Apptainer (1) GEOS (2) Nextflow (2) VCFtools (1) libGLU (2) Armadillo (2) GLM (2) Ninja (1) WPS (2) libaec (2) AutoDock-vina (1) GLib (2) OSPRay (2) WRF (1) libdeflate (2) Autoconf (1) GMP (3) OpenCASCADE (2) WRFchem (1) libdrm (2) Automake (1) GObject-Introspection (2) OpenEXR (2) Wayland (2) libepoxy (2) Autotools (1) GROMACS (2) OpenFOAM (2) X11 (2) libffi (1) BCFtools (1) GSL (3) OpenJPEG (2) XZ (3) libgeotiff (2) BEDTools (1) Gaussian (1) OpenSSL (1) Xerces-C++ (1) libglvnd (2) BLAST+ (1) GenericIO (2) OpenTURNS (2) Yasm (1) libiconv (2) BLASTDB (1) Go (1) PCRE (1) arpack-ng (2) libjpeg-turbo (3) BWA (1) HDF-EOS (2) PCRE2 (1) assimp (1) libpciaccess (2) BamTools (1) HDF (2) PDAL (1) at-spi2-atk (2) libpng (3) Beast (1) HTSlib (1) PETSc (2) at-spi2-core (2) libreadline (2) Bison (1) HYPRE (2) PROJ (2) aws-ofi-nccl (1) libtirpc (2) Blosc (2) HarfBuzz (2) Pango (2) beagle-lib (1) libtool (1) Boost (4) ICU (3) ParMETIS (2) binutils (1) libunwind (2) Bowtie (1) Imath (2) ParallelIO (1) bzip2 (3) libxml2 (3) Bowtie2 (1) JasPer (2) Perl (2) cURL (1) lz4 (3) Brotli (2) Java (2) PostgreSQL (2) cairo (2) minimap2 (1) C-Blosc2 (2) KaHIP (2) QuantumESPRESSO (2) canu (1) nccl (1) CFITSIO (2) LAME (1) RAxML-NG (1) cpeCray (1) ncurses (2) CGAL (2) LLVM (1) SAMtools (1) cpeGNU (1) nlohmann_json (1) CMake (2) LMDB (1) SCOTCH (2) cpeIntel (1) numactl (1) CrayNVHPC (1) LibTIFF (2) SDL2 (2) ecCodes (2) pixman (1) DB (2) M4 (1) SLEPc (2) expat (2) pkgconf (1) DBus (1) MAFFT (1) SPAdes (1) flex (1) tbb (1) ESMF (2) METIS (2) SQLite (2) fontconfig (2) termcap (1) EasyBuild (1) MPC (2) SWIG (3) freetype (2) x264 (1) Eigen (1) MPFR (2) SZ (2) gettext (1) x265 (1) FDS (1) MUMPS (2) SpectrA (1) git-lfs (1) xorg-macros (2) FFmpeg (2) Mako (2) SuiteSparse (2) googletest (1) xprop (2) FastQC (1) Mamba (1) SuperLU_DIST (2) gperf (1) zfp (2) FortranGIS (2) Mesa (2) Tcl (2) gperftools (2) zlib (2) FreeXL (2) Meson (2) Tk (2) groff (2) zstd (3) |
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2.3 Related topics
A separate page is dedicated for explaining how to use local modules on LANTA → Local module & EasyBuild.
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Intel oneAPI (In progress)Fortran compiler flags
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3. Running the software
Every main application software must run on compute/gpu/memory nodes. The recommended approach is to write a job script and send it to Slurm scheduler through sbatch command.
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You can test your initial script on compute-devel or gpu-devel partitions, using |
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Example
Installation guide
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