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Go to the AMBERHOME home directory environment variable
Code Block cd /tarafs/data/project/projxxxx #change projxxxx to your project ID cd amber20_src export AMBERHOME=$PWD
Load modules and prepare for AMBER20 installation
Code Block module purge module load bzip2/1.0.8-GCCcore-8.3.0 module load XZ/5.2.4-GCCcore-8.3.0 module load gcccuda/2019b module load CUDA/10.1.243
Go to the amber directory and execute the compilation script for the installation with cuda
Code Block cd $AMBERHOME ./configure -noX11 -cuda gnu make install
Testing
Code Block make test.cuda_serial
After the installation is successful, you can compile parallel (MPI) versions with cuda
Code Block module load OpenMPI/3.1.4-gcccuda-2019b module load NCCL/2.4.8-gcccuda-2019b export NCCL_HOME=/tarafs/utils/modules/software/NCCL/2.4.8-gcccuda-2019b/
Then, recompilation with MPI for GPU
Code Block ./configure -noX11 -cuda -mpi -nccl gnu make install
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