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Updated: 18 October 2023
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I. WRF-Chem tools
(https://www2.acom.ucar.edu/wrf-chem/wrf-chem-tools-community)
1. Installation
Paste the below whole recipe to into your terminal
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module purge module load cpeIntel/23.0309 module load cray-hdf5-parallel/1.12.2.7 module load cray-netcdf-hdf5parallel/4.9.0.7 export FC=ifort ftn export NETCDF_DIR=${CRAY_NETCDF_HDF5PARALLEL_PREFIX} export LD_LIBRARY_PATH=${CRAY_LD_LIBRARY_PATH}:${LD_LIBRARY_PATH} # GNU # module --> FC=gfortranload cpeGNU/23.03 # --> Addexport FC='ftn -fallow-argument-mismatch' tar xzf ./project/common/WPS_Static/WRFprechem_XXXOct2023.tar.gz # ANTHRO cd ./WRFchem_pre/anthro/src/ csh make_anthro cd ../ ln -s ./src/anthro_emis . cd ../../ # BIO cd ./WRFchem_pre/bio/src/ csh make_util megan_bio_emiss cd ../ ln -s ./src/megan_bio_emiss . cd ../../ # MOZBC cd ./WRFchem_pre/mozbc/src/ csh make_mozbc cd ../ ln -s ./src/mozbc . cd ../../ # FIRE cd ./WRFchem_pre/fire/src/ csh make_fire_emis cd ../ ln -s ./src/fire_emis . cd ../../ # OXYGEN cd ./WRFchem_pre/oxygen/src/ csh make_util wesely csh make_util exo_coldens cd ../ ln -s ./src/exo_coldens . ln -s ./src/wesely . cd ../../ |
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Official mozbc have NOT yet support the hybrid sigma-pressure vertical coordinate presented in WRF V3.9 and later. Although there seem to be a workaround (https://groups.google.com/a/ucar.edu/g/wrf-chem-mozbc/c/5nw6cqLRdxw), please proceed with caution. |
2. Example: Job submission script
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#!/bin/bash #SBATCH -p memory # Partition #SBATCH -N 1 # Number of nodes #SBATCH --ntasks-per-node=1 # Number of MPI processes per node #SBATCH -t 5-00:00:00 # Job runtime limit #SBATCH -J WRFchemWRFprechem # Job name #SBATCH -A ltxxxxxx # Account *** {USER EDIT} *** module purge module load cpeIntel/23.0309 module load cray-hdf5-parallel/1.12.2.7 module load cray-netcdf-hdf5parallel/4.9.0.7 export OMP_NUM_THREADS=1 ulimit -s unlimited ./megan_bio_emiss < megan_bio_emiss.inp > megan_bio_emiss.log ./anthro_emis < anthro_emis.inp > anthro_emis.log ./fire_emis < fire_emis.inp > fire_emis.log ./wesely < wesely.inp > wesely.log ./exo_coldens < exo_coldens.inp > exo_coldens.log #./mozbc_hybridcoord < mozbc_ic.inp > mozbc_ic.log #./mozbc_hybridcoord < mozbc_bc.inp > mozbc_bc.log |
For more information, please explore /project/common/WRF/Example2/ on LANTA.
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II. Prep_Chem_Sources
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The standard dataset for the tool ( |
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module purge module load cpeGNU/23.03 module load cray-hdf5-parallel/1.12.2.3 module load cray-netcdf-hdf5parallel/4.9.0.3 module load zlib/1.2.13 |
3. Edit source codes
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Prep_Chem_Sources can be compiled using Intel compiler as well, the differences are
Load ‘cpeIntel’ instead of ‘cpeGNU’
Edit 'include.mk.intel.wrf' instead of ‘include.mk.gfortran.wrf’
Edit NETCDF, HDF5 and HDF5_LIB as above, but don’t edit F_OPTS
Edit ‘./src/convert_edgar_to_RELACS_REAC.f90’ instead of './src/edgar_emissions.f90'
Comment out ‘use chem1_list'
(We slightly prefer GNU over Intel compilers due to this step)
Use ‘OPT=intel.wrf’ instead of ‘OPT=gfortran.wrf’
/project/common/WRF/Example2/ on LANTA.5. Example: Job submission script
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#!/bin/bash
#SBATCH -p memory # Partition
#SBATCH -N 1 # Number of nodes
#SBATCH --ntasks-per-node=1 # Number of MPI processes per node
#SBATCH -t 5-00:00:00 # Job runtime limit
#SBATCH -J WRFprechem # Job name
#SBATCH -A ltxxxxxx # Account *** {USER EDIT} ***
module purge
module load cpeGNU/23.03
module load cray-hdf5-parallel/1.12.2.3
module load cray-netcdf-hdf5parallel/4.9.0.3
export OMP_NUM_THREADS=1
ulimit -s unlimited
./prep_chem_sources_RADM_WRF_FIM_SIMPLE.exe < prep_chem_sources.inp |
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