This article will guide you to run a Python script using Slurm script on a LANTA HPC system.
Slurm script example for running a Python script
Running on Compute node
#!/bin/bash #SBATCH -p compute # Specify partition [Compute/Memory/GPU] #SBATCH -N 1 –c 128 # Specify number of nodes and processors per task #SBATCH --ntasks-per-node=1 # Specify tasks per node #SBATCH -t 120:00:00 # Specify maximum time limit (hour: minute: second) #SBATCH -A ltxxxxxx # Specify project name #SBATCH -J JOBNAME # Specify job name module purge # Unload all modules module load Miniconda3/22.11.1-1 # Load the Miniconda3 module conda activate tensorflow-2.6.0 # Activate your environment python3 file.py # Run your program or executable code
Running on GPU node
#!/bin/bash #SBATCH -p gpu # Specify partition [Compute/Memory/GPU] #SBATCH -N 1 –c 16 # Specify number of nodes and processors per task #SBATCH --gpus-per-task=1 # Specify number of GPU per task #SBATCH --ntasks-per-node=4 # Specify tasks per node #SBATCH -t 120:00:00 # Specify maximum time limit (hour: minute: second) #SBATCH -A ltxxxxxx # Specify project name #SBATCH -J JOBNAME # Specify job name module purge # Unload all modules module load Miniconda3/22.11.1-1 # Load the Miniconda3 module conda activate tensorflow-2.6.0 # Activate your environment python3 file.py # Run your program or executable code
Submit a job
Use the sbatch script.sh commands to submit your job to Slurm system.
username@lanta:~> sbatch script.sh