BEAST

Official website : https://www.beast2.org/

1 Available version
2 Job submission script
- 2.1 CPU
- 2.2 GPU

Available version

version	module

version	module
2.7.5	Beast/2.7.5-cpeGNU-23.03

Job submission script

For performance recommendation please see https://www.beast2.org/2021/03/31/command-line-options.html

CPU

#!/bin/bash -l
#SBATCH -p gpu                              #specify partition (compute or memory)
#SBATCH -N 1                                #specify number of nodes
#SBATCH --cpus-per-task=16                  #specify number of cpus 
#SBATCH -t 24:00:00                         #job time limit <hr:min:sec>
#SBATCH -J Beast2-cpu                       #job name
#SBATCH -A lt200xxx                         #specify your account ID

module restore
module load Beast/2.7.5-cpeGNU-23.03

beast -threads $SLURM_CPUS_PER_TASK input.xml

GPU

#!/bin/bash -l
#SBATCH -p gpu                              #specify partition
#SBATCH -N 1                                #specify number of nodes
#SBATCH --cpus-per-task=16 --gpus=1         #specify number of cpus and gpus
#SBATCH -t 24:00:00                          #job time limit <hr:min:sec>
#SBATCH -J Beast2-gpu                       #job name
#SBATCH -A lt200xxx                         #specify your account ID

module restore
module load Beast/2.7.5-cpeGNU-23.03

beast -beagle_gpu -beagle_order 1 -threads $SLURM_CPUS_PER_TASK input.xml