Running Bioinformatics workload on LANTA

This introductory bioinformatics course equips participants with essential skills for running Bioinformatics workload on LANTA. This course covers how to use pre-installed software, manage software using Mamba, use tools via Apptainer, and perform custom compilation. Additionally, participants will learn how to select appropriate resources to enhance performance and ensure reliability in their analyses.

Upcoming workshop: https://thaisc.atlassian.net/wiki/x/AoBmK

Duration: 2 hours

Language: Thai

By the end of this course, attendees will know how to:

• Understand how to manage Bioinformatics software on LANTA (module system, Mamba, Apptainer, and custom compilation)

• Able to write a job script of running Bioinformatics workload

• Able to solve common problems

• Useful tips and tricks

Note: This course does NOT provide a deep dive on Apptainer and custom compilation.

Prerequisites:

• Successfully login to LANTA HPC

• Solid experience with the basic Linux command

• Basic knowledge of the LANTA supercomputer

If the above criteria have NOT been met, we recommend the potential participants to go through Introduction to LANTA HPC beforehand.